STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000004086Vacuole membrane protein 1. (434 aa)    
Predicted Functional Partners:
becn1
Beclin 1, autophagy related.
    
 0.959
atg13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
     
 0.926
LOC112158875
Uncharacterized protein.
     
 0.889
ENSOMEP00000028162
Uncharacterized protein.
  
  
 
0.882
ENSOMEP00000015360
Uncharacterized protein.
  
  
 
0.880
tp53inp1
Tumor protein p53 inducible nuclear protein 1.
     
 0.714
ENSOMEP00000027237
Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.
      
 0.537
map1s
Microtubule-associated protein 1Sa.
      
 0.536
LOC112146163
Uncharacterized protein.
      
 0.536
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 
 0.477
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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