STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHX3LIM homeobox 3. (409 aa)    
Predicted Functional Partners:
ISL2
ISL LIM homeobox 2b.
   
0.883
ISL2-2
ISL LIM homeobox 2a.
   
0.876
isl1
ISL LIM homeobox 1.
   
0.876
ALX3
ALX homeobox 3.
   
0.846
LOC112161929
LIM domain binding 1a.
    
 0.780
ENSOMEP00000010771
LIM-domain binding 1b.
    
 0.780
ENSOMEP00000022912
LIM domain binding 2a.
    
 0.780
LOC112162084
Homeobox domain-containing protein.
   
0.645
prrx1
Paired related homeobox 1a.
   
 0.592
ENSOMEP00000003577
Single stranded DNA binding protein 4.
    
 
 0.568
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.