STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARHGAP6Rho GTPase activating protein 6. (864 aa)    
Predicted Functional Partners:
aspm
Abnormal spindle microtubule assembly.
   
   0.797
kif11
Kinesin family member 11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
  
 0.772
ttk
Ttk protein kinase.
   
    0.701
ENSOMEP00000031435
Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.
    
 0.683
ENSOMEP00000036198
NDC80 kinetochore complex component.
   
    0.647
espl1
Extra spindle pole bodies like 1, separase.
   
  
 0.624
LOC112144861
Uncharacterized protein.
    
 0.613
LOC112159709
Uncharacterized protein.
    
 0.613
LOC112159660
Uncharacterized protein.
    
 0.613
LOC112144872
Ras homolog family member Ca.
    
 0.613
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.