STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000004309Uncharacterized protein. (2051 aa)    
Predicted Functional Partners:
LOC112140337
ATP-binding cassette, sub-family A (ABC1), member 1A.
  
  
 
0.871
LOC112150479
Zgc:172302.
  
  
 
0.871
nr1h3
Nuclear receptor subfamily 1, group H, member 3.
    
 0.768
LOC112143598
Uncharacterized protein.
    
 0.706
LOC112143599
Uncharacterized protein.
    
 0.706
LOC112153262
ATP binding cassette subfamily A member 1.
  
  
 
0.698
LOC112161709
Cytochrome c oxidase assembly homolog 15 (yeast).
    
 0.671
abca3
ATP-binding cassette, sub-family A (ABC1), member 3b.
  
 
0.651
LOC112153459
Si:ch211-153b23.3.
     
 0.647
ENSOMEP00000016246
ATP-binding cassette, sub-family A (ABC1), member 4a.
  
  
 
0.629
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.