STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kctd16Potassium channel tetramerization domain containing 16b. (433 aa)    
Predicted Functional Partners:
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.650
LOC112149657
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.650
commd1
Copper metabolism (Murr1) domain containing 1.
     
 0.602
tfap2d
Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).
   
 0.568
ENSOMEP00000005158
Transcription factor AP-2 epsilon.
   
 0.559
ENSOMEP00000005844
Si:ch73-127m5.2.
   
 0.559
tfap2a
Transcription factor AP-2 alpha.
   
 0.559
tfap2b
Transcription factor AP-2 beta.
   
 0.559
LOC112145778
Transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma).
   
 0.559
ube2f
Ubiquitin-conjugating enzyme E2F (putative); Belongs to the ubiquitin-conjugating enzyme family.
    
  0.554
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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