STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112152916Peptidylprolyl isomerase. (459 aa)    
Predicted Functional Partners:
bcl2
BCL2 apoptosis regulator b.
    
 
 0.844
LOC112137228
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.
   
 0.789
ENSOMEP00000035769
Heat shock protein 90, alpha (cytosolic), class B member 1.
   
 0.789
ENSOMEP00000024731
Si:ch211-131k2.3.
   
 0.752
ENSOMEP00000003624
Uncharacterized protein.
   
 0.746
ENSOMEP00000009025
TNF receptor-associated protein 1.
   
 0.746
LOC112140338
TSC complex subunit 1b.
   
 0.746
usp30
Ubiquitin carboxyl-terminal hydrolase.
    
 0.741
ptges3
Prostaglandin E synthase 3b (cytosolic).
   
 0.737
LOC112159573
Prostaglandin E synthase 3a (cytosolic).
   
 0.737
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.