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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112151083Oxidative stress responsive kinase 1b. (525 aa)    
Predicted Functional Partners:
ENSOMEP00000010687
SEC62 homolog, preprotein translocation factor.
    
 
 0.934
ENSOMEP00000012527
SEC61 translocon gamma subunit.
   
 
 0.934
sec63
SEC63 homolog, protein translocation regulator.
    
 
 0.908
LOC112139973
Plug_translocon domain-containing protein.
    
 
 0.842
sec61a1
Plug_translocon domain-containing protein.
    
 
 0.842
sec61b
Uncharacterized protein.
    
 
 0.776
ENSOMEP00000028242
Uncharacterized protein.
    
 
 0.776
LOC112136473
Calcium binding protein 39.
   
 0.727
LOC112159949
Calcium binding protein 39-like.
   
 0.727
LOC112153265
Calcium binding protein 39, like 1.
   
 0.727
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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