STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmipGEM interacting protein. (1018 aa)    
Predicted Functional Partners:
CDC42
Cell division cycle 42.
   
 0.748
LOC112144774
Cell division cycle 42.
   
 0.748
rac2
Rac family small GTPase 2.
   
 0.691
RAC1
Rac family small GTPase 1a.
   
 0.691
LOC112146455
Uncharacterized protein.
   
 0.691
LOC112162359
Rac family small GTPase 3b.
   
 0.691
LOC112143725
Uncharacterized protein.
   
 0.684
LOC112137131
Uncharacterized protein.
   
 0.684
LOC112139281
Uncharacterized protein.
   
 0.684
inppl1
Inositol polyphosphate phosphatase-like 1a.
   
 
  0.630
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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