STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112155993RNA binding motif protein 4.3. (347 aa)    
Predicted Functional Partners:
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.690
LOC112163035
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.690
LOC112141993
Runt-related transcription factor.
    
  0.618
runx3
Runt-related transcription factor.
    
  0.618
runx2
Runt-related transcription factor.
    
  0.618
ilf2
Interleukin enhancer binding factor 2.
   
 
 0.589
ENSOMEP00000031071
Runt domain-containing protein.
    
  0.564
LOC112153034
Heterogeneous nuclear ribonucleoprotein A/Ba.
   
  0.562
LOC112142831
Uncharacterized protein.
   
  0.562
ENSOMEP00000001537
Uncharacterized protein.
   
  0.558
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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