STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
klhl40Kelch-like family member 40b. (612 aa)    
Predicted Functional Partners:
ENSOMEP00000015897
Bardet-Biedl syndrome 9.
   
 0.931
ENSOMEP00000006132
Bardet-Biedl syndrome 4.
    
 0.926
bbs2
Bardet-Biedl syndrome 2 protein homolog.
    
 0.918
ttc8
Tetratricopeptide repeat domain 8.
   
 0.918
bbs7
Bardet-Biedl syndrome 7.
   
 0.916
bbs1
Bardet-Biedl syndrome 1.
    
 0.901
ENSOMEP00000024302
BBS1 domain-containing protein.
    
 0.901
ENSOMEP00000000371
Leucine zipper transcription factor-like 1.
   
 0.810
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.715
LOC112141467
Sequestosome 1.
    
 0.697
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.