STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)    
Predicted Functional Partners:
ENSOMEP00000001164
NOP58 ribonucleoprotein homolog (yeast).
   
 0.999
nop56
NOP56 ribonucleoprotein homolog.
   
 0.999
rrp9
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
   
 0.999
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.999
utp15
UTP15 small subunit processome component.
   
 0.999
fbl
Fibrillarin.
   
 0.999
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
    
 0.998
utp4
UTP4 small subunit processome component.
   
 0.998
prpf3
PRP3 pre-mRNA processing factor 3 homolog (yeast).
   
 0.998
ENSOMEP00000019119
PRP4 pre-mRNA processing factor 4 homolog (yeast).
   
 0.997
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.