STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000005270VWFD domain-containing protein. (395 aa)    
Predicted Functional Partners:
ENSOMEP00000005226
Uncharacterized protein.
 
     0.931
LOC112158842
Glycoprotein IX (platelet).
    
  0.894
gp1bb
Glycoprotein Ib platelet subunit beta.
    
  0.894
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.887
LOC112154448
Integrin beta; Belongs to the integrin beta chain family.
    
 0.881
ENSOMEP00000025174
VWFD domain-containing protein.
 
    
0.876
LOC112150427
Si:ch211-117l17.7.
    
  0.761
ENSOMEP00000032272
VWFD domain-containing protein.
 
     
0.679
LOC112150849
Integrin beta; Belongs to the integrin beta chain family.
    
 0.672
itgb5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.672
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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