STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112149128Glycerophosphodiester phosphodiesterase domain containing 5b. (589 aa)    
Predicted Functional Partners:
ENSOMEP00000034307
Glycerol-3-phosphate dehydrogenase 2 (mitochondrial).
  
 0.844
ENSOMEP00000005257
Phospholipase A2.
   
 
 0.803
l2hgdh
L-2-hydroxyglutarate dehydrogenase.
    
 0.781
CRLS1
Cardiolipin synthase 1.
   
 0.740
cnppd1
Cyclin Pas1/PHO80 domain containing 1.
    
 0.693
nhej1
Nonhomologous end-joining factor 1.
    
 0.693
ENSOMEP00000006756
NAD kinase a.
  
 
  0.664
LOC112147846
NAD kinase b.
  
 
  0.664
gpcpd1
Glycerophosphocholine phosphodiesterase 1.
     
 0.661
ENSOMEP00000008602
Transcription termination factor, RNA polymerase II.
    
  0.651
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.