STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adamts1ADAM metallopeptidase with thrombospondin type 1 motif, 1. (932 aa)    
Predicted Functional Partners:
ENSOMEP00000020592
Brevican.
     
 0.621
mmp15
Matrix metallopeptidase 15b.
      
 0.565
pofut2
Protein O-fucosyltransferase 2.
     
 0.545
LOC112146029
TIMP metallopeptidase inhibitor 2b.
    
 
 0.497
ENSOMEP00000022812
Beta 3-glucosyltransferase a.
    
 0.496
b3glct
Beta 3-glucosyltransferase b.
    
 0.496
LOC112163274
Prostaglandin E receptor 4 (subtype EP4) b.
      
 0.465
ENSOMEP00000005755
Transmembrane protein 130.
   
 
  0.412
gba
Glucosylceramidase.
   
 
  0.412
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.