STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112154071Uncharacterized protein. (874 aa)    
Predicted Functional Partners:
LOC112145419
SET domain and mariner transposase fusion gene.
   
 0.846
suv39h1
Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.
   
 0.844
ENSOMEP00000033717
SET domain containing 7, histone lysine methyltransferase.
   
 0.827
kmt5a
Lysine methyltransferase 5Aa.
   
 0.819
LOC112148771
Lysine methyltransferase 5Ab.
   
 0.819
ENSOMEP00000003717
Lysine (K)-specific methyltransferase 2E.
    
 0.817
smyd3
SET and MYND domain containing 3.
   
 0.817
setdb1
SET domain bifurcated histone lysine methyltransferase 1b.
   
 0.807
ENSOMEP00000020599
SET domain containing 2, histone lysine methyltransferase.
   
 0.805
ENSOMEP00000010591
Uncharacterized protein.
   
  0.803
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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