STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000005536Ras and Rab interactor 1a. (555 aa)    
Predicted Functional Partners:
abl1
Tyrosine-protein kinase.
    
 0.718
abl2
Tyrosine-protein kinase.
    
 0.718
LOC112148531
Uncharacterized protein.
    
 0.705
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
    
 0.705
LOC112149869
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
 0.705
LOC112136549
RAB5A, member RAS oncogene family, b.
    
 0.673
LOC112162956
RAB5A, member RAS oncogene family, a.
    
 0.673
rab5c
RAB5C, member RAS oncogene family.
    
 0.673
LOC112137972
RAB5B, member RAS oncogene family.
    
 0.673
zfand4
Zinc finger, AN1-type domain 4.
    
  0.608
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.