STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112138796LIM homeobox 1b. (403 aa)    
Predicted Functional Partners:
ENSOMEP00000019026
Cyclin K; Belongs to the cyclin family.
    
   0.889
ENSOMEP00000026281
MADS-box domain-containing protein.
    
 0.609
srf
Serum response factor b.
    
 0.609
LOC112161929
LIM domain binding 1a.
    
 0.600
ENSOMEP00000010771
LIM-domain binding 1b.
    
 0.600
ENSOMEP00000022912
LIM domain binding 2a.
    
 0.600
gata6
GATA binding protein 6.
    
 0.507
gata4
GATA binding protein 4.
    
 0.507
ENSOMEP00000027434
GATA binding protein 5.
    
 0.507
LHX3
LIM homeobox 3.
   
0.501
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.