STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000005645SUMO specific peptidase 5. (263 aa)    
Predicted Functional Partners:
ENSOMEP00000033039
Small ubiquitin-related modifier.
   
 0.871
tex10
Testis expressed 10.
    
 0.867
ENSOMEP00000015848
WD repeat domain 18.
    
 0.864
ENSOMEP00000016531
Ubiquitin-like domain-containing protein.
   
 0.837
LOC112155690
Small ubiquitin like modifier 3b.
   
 0.837
sumo2
Small ubiquitin-related modifier.
   
 0.837
ENSOMEP00000033845
Rad60-SLD domain-containing protein.
   
 0.836
nup153
Nucleoporin 153.
   
 0.816
crebzf
CREB/ATF bZIP transcription factor.
   
 0.786
las1l
LAS1-like, ribosome biogenesis factor.
   
 0.786
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.