STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rb1cc1RB1-inducible coiled-coil 1. (1601 aa)    
Predicted Functional Partners:
atg13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
    
 0.999
atg101
Autophagy related 101.
    
 0.998
atg14
Autophagy related 14.
   
 0.996
nrbf2
Nuclear receptor binding factor 2b.
    
 0.994
ulk2
Unc-51 like autophagy activating kinase 2.
    
 0.993
ulk1
Unc-51 like autophagy activating kinase 1.
    
 0.992
ENSOMEP00000031283
Unc-51 like autophagy activating kinase 1a.
    
 0.991
becn1
Beclin 1, autophagy related.
    
 0.990
ENSOMEP00000015044
ATG16 autophagy related 16-like 1 (S. cerevisiae).
   
 0.982
LOC112149276
WD_REPEATS_REGION domain-containing protein.
   
 0.981
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.