LOC112144806 protein (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC112144806

Peptidylprolyl isomerase. (455 aa)

Predicted Functional Partners:

LOC112137228

0.945

ENSOMEP00000035769

0.945

stip1

0.906

ptges3

0.883

LOC112159573

0.883

ENSOMEP00000003624

0.858

ENSOMEP00000009025

0.858

LOC112140338

0.858

LOC112153800

0.848

NR3C1

0.840

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000003624	LOC112144806	ENSOMEP00000003624	ENSOMEP00000005766	Uncharacterized protein.	Peptidylprolyl isomerase.	0.858
ENSOMEP00000003624	LOC112153800	ENSOMEP00000003624	ENSOMEP00000006092	Uncharacterized protein.	Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor).	0.838
ENSOMEP00000003624	LOC112159573	ENSOMEP00000003624	ENSOMEP00000033330	Uncharacterized protein.	Prostaglandin E synthase 3a (cytosolic).	0.938
ENSOMEP00000003624	NR3C1	ENSOMEP00000003624	ENSOMEP00000004516	Uncharacterized protein.	Nuclear receptor subfamily 3 group C member 1.	0.838
ENSOMEP00000003624	ptges3	ENSOMEP00000003624	ENSOMEP00000005627	Uncharacterized protein.	Prostaglandin E synthase 3b (cytosolic).	0.938
ENSOMEP00000003624	stip1	ENSOMEP00000003624	ENSOMEP00000007382	Uncharacterized protein.	Stress-induced phosphoprotein 1.	0.987
ENSOMEP00000009025	LOC112144806	ENSOMEP00000009025	ENSOMEP00000005766	TNF receptor-associated protein 1.	Peptidylprolyl isomerase.	0.858
ENSOMEP00000009025	LOC112153800	ENSOMEP00000009025	ENSOMEP00000006092	TNF receptor-associated protein 1.	Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor).	0.838
ENSOMEP00000009025	LOC112159573	ENSOMEP00000009025	ENSOMEP00000033330	TNF receptor-associated protein 1.	Prostaglandin E synthase 3a (cytosolic).	0.938
ENSOMEP00000009025	NR3C1	ENSOMEP00000009025	ENSOMEP00000004516	TNF receptor-associated protein 1.	Nuclear receptor subfamily 3 group C member 1.	0.838
ENSOMEP00000009025	ptges3	ENSOMEP00000009025	ENSOMEP00000005627	TNF receptor-associated protein 1.	Prostaglandin E synthase 3b (cytosolic).	0.938
ENSOMEP00000009025	stip1	ENSOMEP00000009025	ENSOMEP00000007382	TNF receptor-associated protein 1.	Stress-induced phosphoprotein 1.	0.987
ENSOMEP00000035769	LOC112137228	ENSOMEP00000035769	ENSOMEP00000024356	Heat shock protein 90, alpha (cytosolic), class B member 1.	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	0.890
ENSOMEP00000035769	LOC112144806	ENSOMEP00000035769	ENSOMEP00000005766	Heat shock protein 90, alpha (cytosolic), class B member 1.	Peptidylprolyl isomerase.	0.945
ENSOMEP00000035769	LOC112153800	ENSOMEP00000035769	ENSOMEP00000006092	Heat shock protein 90, alpha (cytosolic), class B member 1.	Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor).	0.946
ENSOMEP00000035769	LOC112159573	ENSOMEP00000035769	ENSOMEP00000033330	Heat shock protein 90, alpha (cytosolic), class B member 1.	Prostaglandin E synthase 3a (cytosolic).	0.974
ENSOMEP00000035769	NR3C1	ENSOMEP00000035769	ENSOMEP00000004516	Heat shock protein 90, alpha (cytosolic), class B member 1.	Nuclear receptor subfamily 3 group C member 1.	0.946
ENSOMEP00000035769	ptges3	ENSOMEP00000035769	ENSOMEP00000005627	Heat shock protein 90, alpha (cytosolic), class B member 1.	Prostaglandin E synthase 3b (cytosolic).	0.974
ENSOMEP00000035769	stip1	ENSOMEP00000035769	ENSOMEP00000007382	Heat shock protein 90, alpha (cytosolic), class B member 1.	Stress-induced phosphoprotein 1.	0.995
LOC112137228	ENSOMEP00000035769	ENSOMEP00000024356	ENSOMEP00000035769	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.890