STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000005840BHLH domain-containing protein. (224 aa)    
Predicted Functional Partners:
lmo2
LIM domain only 2 (rhombotin-like 1).
   
 0.982
LOC112161929
LIM domain binding 1a.
    
 0.917
ENSOMEP00000010771
LIM-domain binding 1b.
    
 0.917
LOC112144544
GATA binding protein 1a.
   
 0.911
ENSOMEP00000022912
LIM domain binding 2a.
    
 0.904
TCF4
Transcription factor 4.
    
 0.865
ENSOMEP00000004274
Uncharacterized protein.
    
 0.865
ENSOMEP00000018989
Transcription factor 3a.
    
 0.865
tcf12
Transcription factor 12.
    
 0.865
TCF3
Transcription factor 3b.
    
 0.865
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.