LOC112142835 protein (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC112142835

Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (247 aa)

Predicted Functional Partners:

fgfr3

0.759

LOC112148278

0.759

LOC112142653

0.759

fgfr2

0.759

tie1

0.757

LOC112162937

0.753

LOC112162615

0.745

FGFRL1

0.737

stil

0.737

LOC112153728

0.737

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FGFRL1	LOC112142835	ENSOMEP00000005144	ENSOMEP00000006074	Fibroblast growth factor receptor like 1.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.737
LOC112142653	LOC112142835	ENSOMEP00000023110	ENSOMEP00000006074	Fibroblast growth factor receptor 4.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.759
LOC112142653	LOC112162937	ENSOMEP00000023110	ENSOMEP00000024118	Fibroblast growth factor receptor 4.	Fibroblast growth factor receptor.	0.662
LOC112142835	FGFRL1	ENSOMEP00000006074	ENSOMEP00000005144	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor receptor like 1.	0.737
LOC112142835	LOC112142653	ENSOMEP00000006074	ENSOMEP00000023110	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor receptor 4.	0.759
LOC112142835	LOC112148278	ENSOMEP00000006074	ENSOMEP00000014918	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor receptor.	0.759
LOC112142835	LOC112153728	ENSOMEP00000006074	ENSOMEP00000028678	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor receptor like 1a.	0.737
LOC112142835	LOC112162615	ENSOMEP00000006074	ENSOMEP00000025524	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.745
LOC112142835	LOC112162937	ENSOMEP00000006074	ENSOMEP00000024118	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor receptor.	0.753
LOC112142835	fgfr2	ENSOMEP00000006074	ENSOMEP00000032444	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor receptor.	0.759
LOC112142835	fgfr3	ENSOMEP00000006074	ENSOMEP00000003663	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor receptor.	0.759
LOC112142835	stil	ENSOMEP00000006074	ENSOMEP00000025617	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	STIL centriolar assembly protein.	0.737
LOC112142835	tie1	ENSOMEP00000006074	ENSOMEP00000026751	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Tyrosine kinase with immunoglobulin-like and EGF-like domains 1.	0.757
LOC112148278	LOC112142835	ENSOMEP00000014918	ENSOMEP00000006074	Fibroblast growth factor receptor.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.759
LOC112148278	LOC112162937	ENSOMEP00000014918	ENSOMEP00000024118	Fibroblast growth factor receptor.	Fibroblast growth factor receptor.	0.900
LOC112153728	LOC112142835	ENSOMEP00000028678	ENSOMEP00000006074	Fibroblast growth factor receptor like 1a.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.737
LOC112162615	LOC112142835	ENSOMEP00000025524	ENSOMEP00000006074	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.745
LOC112162937	LOC112142653	ENSOMEP00000024118	ENSOMEP00000023110	Fibroblast growth factor receptor.	Fibroblast growth factor receptor 4.	0.662
LOC112162937	LOC112142835	ENSOMEP00000024118	ENSOMEP00000006074	Fibroblast growth factor receptor.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.753
LOC112162937	LOC112148278	ENSOMEP00000024118	ENSOMEP00000014918	Fibroblast growth factor receptor.	Fibroblast growth factor receptor.	0.900