LOC112151932 protein (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC112151932

Glutamate receptor, metabotropic 3. (883 aa)

Predicted Functional Partners:

ENSOMEP00000010591

0.801

ENSOMEP00000021778

0.801

f2

0.750

gabbr2

0.710

ENSOMEP00000014803

0.689

ENSOMEP00000014825

0.689

LOC112160085

0.680

ENSOMEP00000010211

0.674

LOC112145025

0.674

ENSOMEP00000010286

0.672

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000010211	ENSOMEP00000010591	ENSOMEP00000010211	ENSOMEP00000010591	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Uncharacterized protein.	0.801
ENSOMEP00000010211	ENSOMEP00000014803	ENSOMEP00000010211	ENSOMEP00000014803	G_PROTEIN_RECEP_F3_4 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.689
ENSOMEP00000010211	ENSOMEP00000014825	ENSOMEP00000010211	ENSOMEP00000014825	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Uncharacterized protein.	0.689
ENSOMEP00000010211	ENSOMEP00000021778	ENSOMEP00000010211	ENSOMEP00000021778	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Uncharacterized protein.	0.801
ENSOMEP00000010211	LOC112151932	ENSOMEP00000010211	ENSOMEP00000006263	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Glutamate receptor, metabotropic 3.	0.674
ENSOMEP00000010211	LOC112160085	ENSOMEP00000010211	ENSOMEP00000023405	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Si:dkey-1h24.2; Belongs to the G-protein coupled receptor 1 family.	0.418
ENSOMEP00000010211	f2	ENSOMEP00000010211	ENSOMEP00000015915	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.671
ENSOMEP00000010211	gabbr2	ENSOMEP00000010211	ENSOMEP00000013171	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Gamma-aminobutyric acid (GABA) B receptor, 2.	0.502
ENSOMEP00000010286	ENSOMEP00000010591	ENSOMEP00000010286	ENSOMEP00000010591	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Uncharacterized protein.	0.801
ENSOMEP00000010286	ENSOMEP00000014803	ENSOMEP00000010286	ENSOMEP00000014803	G_PROTEIN_RECEP_F3_4 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.689
ENSOMEP00000010286	ENSOMEP00000014825	ENSOMEP00000010286	ENSOMEP00000014825	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Uncharacterized protein.	0.689
ENSOMEP00000010286	ENSOMEP00000021778	ENSOMEP00000010286	ENSOMEP00000021778	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Uncharacterized protein.	0.801
ENSOMEP00000010286	LOC112151932	ENSOMEP00000010286	ENSOMEP00000006263	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Glutamate receptor, metabotropic 3.	0.672
ENSOMEP00000010286	LOC112160085	ENSOMEP00000010286	ENSOMEP00000023405	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Si:dkey-1h24.2; Belongs to the G-protein coupled receptor 1 family.	0.434
ENSOMEP00000010286	f2	ENSOMEP00000010286	ENSOMEP00000015915	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.671
ENSOMEP00000010286	gabbr2	ENSOMEP00000010286	ENSOMEP00000013171	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Gamma-aminobutyric acid (GABA) B receptor, 2.	0.502
ENSOMEP00000010591	ENSOMEP00000010211	ENSOMEP00000010591	ENSOMEP00000010211	Uncharacterized protein.	G_PROTEIN_RECEP_F3_4 domain-containing protein.	0.801
ENSOMEP00000010591	ENSOMEP00000010286	ENSOMEP00000010591	ENSOMEP00000010286	Uncharacterized protein.	G_PROTEIN_RECEP_F3_4 domain-containing protein.	0.801
ENSOMEP00000010591	ENSOMEP00000014803	ENSOMEP00000010591	ENSOMEP00000014803	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.469
ENSOMEP00000010591	ENSOMEP00000014825	ENSOMEP00000010591	ENSOMEP00000014825	Uncharacterized protein.	Uncharacterized protein.	0.469