STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pus10Pseudouridine synthase 10. (535 aa)    
Predicted Functional Partners:
ENSOMEP00000013361
Actin binding transcription modulator.
    
   0.893
ENSOMEP00000033339
NOP10 ribonucleoprotein homolog (yeast).
     
 0.618
pus7
Pseudouridine synthase 7.
   
  
 0.609
pus7l
Pseudouridine synthase 7 like.
   
  
 0.577
ENSOMEP00000024867
Dyskeratosis congenita 1, dyskerin.
   
  
 0.551
rpusd1
RNA pseudouridine synthase domain containing 1.
      
 0.549
ENSOMEP00000035402
Pseudouridine synthase 1.
   
  
 0.543
trub2
TruB pseudouridine (psi) synthase family member 2.
   
  
 0.542
pus3
Pseudouridylate synthase 3.
   
  
 0.539
ENSOMEP00000020854
Flavodoxin-like domain-containing protein.
      
 0.534
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.