STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112155560Ig-like domain-containing protein. (880 aa)    
Predicted Functional Partners:
ENSOMEP00000008835
Ig-like domain-containing protein.
   
0.991
fancm
Uncharacterized protein.
    
 0.758
LOC112148474
Polymerase (DNA directed), delta 2, regulatory subunit.
    
 0.736
pold1
DNA polymerase.
   
 0.705
LOC112148299
Survival of motor neuron 1, telomeric.
    
 0.700
ENSOMEP00000002422
MUS81 structure-specific endonuclease subunit.
    
 0.691
snrpd2
Small nuclear ribonucleoprotein Sm D2.
    
 0.664
ENSOMEP00000011219
Uncharacterized protein.
    
 0.662
ENSOMEP00000028590
Uncharacterized protein.
    
 0.662
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.661
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.