STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arrdc3Arrestin domain containing 3a. (410 aa)    
Predicted Functional Partners:
ENSOMEP00000001362
E3 ubiquitin-protein ligase.
    
 
 0.901
nedd4l
NEDD4 like E3 ubiquitin protein ligase.
    
 
 0.901
ENSOMEP00000006534
Thioredoxin domain-containing protein.
    
 0.718
LOC112155709
Thioredoxin; Belongs to the thioredoxin family.
    
 0.718
LOC112156198
Thioredoxin; Belongs to the thioredoxin family.
    
 0.718
LOC112139894
NACHT domain-containing protein.
    
 0.674
LOC112155459
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.633
ENSOMEP00000029489
Uncharacterized protein.
    
 0.618
ENSOMEP00000030515
Uncharacterized protein.
    
 0.618
LOC112142970
Arrestin 3a, retinal (X-arrestin).
    
 
 0.597
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.