STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000006602Pancreatic and duodenal homeobox 1. (239 aa)    
Predicted Functional Partners:
spopl
Speckle type BTB/POZ protein like b.
    
   0.858
SPOP
Speckle type BTB/POZ protein.
    
   0.858
ins
Insulin; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.
   
 
 0.676
LOC112153519
Insulin; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.
   
 
 0.676
mafa
V-maf avian musculoaponeurotic fibrosarcoma oncogene homolog Aa.
   
 0.609
LOC112147407
Pre-B-cell leukemia homeobox 1a.
    
 0.604
LOC112146314
Pre-B-cell leukemia transcription factor 4.
    
 0.604
pbx3
Homeobox domain-containing protein.
    
 0.604
LOC112150672
Homeobox domain-containing protein.
    
 0.604
LOC112136611
Pre-B-cell leukemia homeobox 2.
    
 0.604
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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