STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112157328Cyclic nucleotide gated channel subunit alpha 1a. (688 aa)    
Predicted Functional Partners:
ENSOMEP00000020529
Cyclic nucleotide gated channel beta 1a.
  
0.907
ENSOMEP00000034047
Cyclic nucleotide-binding domain-containing protein.
   
0.901
ENSOMEP00000025385
Cyclic nucleotide gated channel subunit alpha 1b.
  
 
 
0.887
calml4
Calmodulin-like 4a.
     
 0.886
calm2
Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.
     
 0.870
calm2-2
Calmodulin 3.
     
 0.870
calm2-3
Calmodulin 3.
     
 0.870
ENSOMEP00000031807
Cyclic nucleotide gated channel beta 3, tandem duplicate 2.
  
0.821
ENSOMEP00000015358
Cyclic nucleotide gated channel beta 3, tandem duplicate 1.
  
0.820
rcvrn
Recoverin a.
   
 
 0.762
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.