STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pou2af1Uncharacterized protein. (288 aa)    
Predicted Functional Partners:
cd79a
CD79a molecule, immunoglobulin-associated alpha.
   
  
 0.835
cd79b
Ig-like domain-containing protein.
   
  
 0.817
pou2f1
POU domain protein.
    
 
 0.748
ENSOMEP00000015766
POU domain protein.
    
 
 0.748
pou2f3
POU domain protein.
    
 
 0.748
pou2f2
POU domain protein.
    
 
 0.748
pou1f1
POU domain protein.
    
 
 0.647
pou6f2
POU domain protein.
    
 
 0.499
pou6f1
POU domain protein.
    
 
 0.499
LOC112143921
POU domain protein.
    
 
 0.470
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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