STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112159947Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (573 aa)    
Predicted Functional Partners:
LOC112154894
RAN binding protein 2.
   
 0.671
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.652
LOC112149657
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.652
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.638
zfand4
Zinc finger, AN1-type domain 4.
    
 0.628
LOC112139978
Recombination signal binding protein for immunoglobulin kappa J region-like.
   
 0.597
ENSOMEP00000013068
Recombination signal binding protein for immunoglobulin kappa J region a.
   
 0.597
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
   
 0.597
adgrb3
Adhesion G protein-coupled receptor B3; Belongs to the G-protein coupled receptor 2 family.
    
 0.575
ENSOMEP00000006291
Adhesion G protein-coupled receptor B1b; Belongs to the G-protein coupled receptor 2 family.
    
 0.575
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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