STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccn1Cellular communication network factor 1. (376 aa)    
Predicted Functional Partners:
ccn2
Cellular communication network factor 2a.
  
  
0.783
AXL
AXL receptor tyrosine kinase.
   
  
 0.555
isca1
Iron-sulfur cluster assembly 1.
      
 0.501
map4k2
Non-specific serine/threonine protein kinase; May play a role in the response to environmental stress. Appears to act upstream of the JUN N-terminal pathway.
   
  
 0.495
stk25
Serine/threonine kinase 25b.
      
 0.470
LOC112142905
Neurofibromin 2b (merlin).
      
 0.470
ankrd1
Ankyrin repeat domain 1a (cardiac muscle).
    
 
 0.402
LOC112158236
V-fos FBJ murine osteosarcoma viral oncogene homolog Ab.
   
  
 0.401
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.