close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPTFBromodomain PHD finger transcription factor. (2452 aa)    
Predicted Functional Partners:
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 
 0.941
rbbp4
Retinoblastoma binding protein 4.
    
 
 0.818
LOC112152890
Retinoblastoma binding protein 4, like.
    
 
 0.818
LOC112142475
Remodeling and spacing factor 1b, tandem duplicate 1.
   
 
 0.792
ENSOMEP00000020599
SET domain containing 2, histone lysine methyltransferase.
   
   0.783
hells
Helicase, lymphoid specific.
   
 
 0.774
ENSOMEP00000025024
Chromodomain helicase DNA binding protein 1-like.
   
 
 0.774
ENSOMEP00000000773
PHD finger protein 3.
   
   
0.763
wdr73
WD repeat domain 73.
    
 
 0.747
cunh17orf49
Zgc:103508.
    
 0.719
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.