STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000007863Mitochondrial ribosomal protein L54. (138 aa)    
Predicted Functional Partners:
ENSOMEP00000033255
Mitochondrial ribosomal protein L23.
   
 
 0.986
ENSOMEP00000033413
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.981
ENSOMEP00000032804
Mitochondrial ribosomal protein L27.
   
 
 0.980
mrps16
Mitochondrial ribosomal protein S16.
   
   0.979
mrps12
Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.
   
 
 0.976
mrpl41
Mitochondrial ribosomal protein L41.
   
 
 0.974
MRPL49
Mitochondrial ribosomal protein L49.
   
 
 0.970
ENSOMEP00000034959
Mitochondrial ribosomal protein L14.
   
   0.969
mrpl46
Mitochondrial ribosomal protein L46.
   
 
 0.968
mrpl47
Mitochondrial ribosomal protein L47.
   
 
 0.967
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.