STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000007886Homeobox domain-containing protein. (146 aa)    
Predicted Functional Partners:
LOC112161929
LIM domain binding 1a.
    
 0.679
ENSOMEP00000010771
LIM-domain binding 1b.
    
 0.679
ENSOMEP00000022912
LIM domain binding 2a.
    
 0.679
gata4
GATA binding protein 4.
   
 0.614
LOC112148504
Folliculogenesis specific bHLH transcription factor.
   
 0.610
ENSOMEP00000026281
MADS-box domain-containing protein.
    
 0.609
srf
Serum response factor b.
    
 0.609
ascl1
Achaete-scute family bHLH transcription factor 1a.
    
 0.541
gata6
GATA binding protein 6.
   
 0.513
ENSOMEP00000027434
GATA binding protein 5.
   
 0.513
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.