STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112150316Scaffold attachment factor B. (807 aa)    
Predicted Functional Partners:
ENSOMEP00000003182
Serine and arginine rich splicing factor 1a.
   
 0.825
LOC112140724
Uncharacterized protein.
   
 0.825
LOC112163197
Serine and arginine rich splicing factor 9.
   
 0.818
snrnp70
Small nuclear ribonucleoprotein 70 (U1).
   
 0.792
ENSOMEP00000001041
Transformer 2 beta homolog.
   
 0.774
ENSOMEP00000011507
RRM domain-containing protein.
   
 0.774
LOC112163155
Transformer 2 alpha homolog.
   
 0.774
ENSOMEP00000006521
Serine and arginine rich splicing factor 2a.
   
 
 0.734
LOC112146836
RRM domain-containing protein.
   
 
 0.734
SRSF4
Serine and arginine rich splicing factor 4.
   
 0.709
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.