STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000008421Rho-GAP domain-containing protein. (192 aa)    
Predicted Functional Partners:
ENSOMEP00000024679
Uncharacterized protein.
 
      0.636
CDC42
Cell division cycle 42.
    
  0.443
LOC112144774
Cell division cycle 42.
    
  0.443
LOC112142002
Uncharacterized protein.
    
0.429
rictor
RPTOR independent companion of MTOR, complex 2 a.
   
 
  0.413
LOC112143725
Uncharacterized protein.
    
  0.406
LOC112137131
Uncharacterized protein.
    
  0.406
LOC112139281
Uncharacterized protein.
    
  0.406
LOC112144861
Uncharacterized protein.
    
  0.403
LOC112159709
Uncharacterized protein.
    
  0.403
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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