STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000008471Reverse transcriptase domain-containing protein. (437 aa)    
Predicted Functional Partners:
mrpl16
Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
   
 0.655
mrpl2
Mitochondrial ribosomal protein L2.
   
 
 0.420
LOC112146730
HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1.
   
 0.419
LOC112159253
Ribosomal protein L10.
   
 0.419
sil1
SIL1 nucleotide exchange factor.
   
 0.419
mrps14
Mitochondrial ribosomal protein S14.
    
 
 0.409
mrpl43
Mitochondrial ribosomal protein L43.
    
   0.408
dap3
Death associated protein 3.
    
   0.408
mrpl33
Mitochondrial ribosomal protein L33.
    
   0.408
ENSOMEP00000011993
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
    
   0.408
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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