STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdlim2PDZ and LIM domain 2 (mystique). (351 aa)    
Predicted Functional Partners:
git2
G protein-coupled receptor kinase interacting ArfGAP 2a.
    
 0.731
git1
G protein-coupled receptor kinase interacting ArfGAP 1.
    
 0.731
LOC112163091
G protein-coupled receptor kinase interacting ArfGAP 2b.
    
 0.731
LOC112138372
Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.702
ENSOMEP00000010866
FERM domain-containing protein.
    
 0.702
ENSOMEP00000010878
Uncharacterized protein.
    
 0.702
ENSOMEP00000010881
Focal_AT domain-containing protein.
    
 0.702
ENSOMEP00000010900
Protein tyrosine kinase 2ab; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.702
ptk2b
Protein tyrosine kinase 2 beta, b; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.702
parvb
Parvin, beta.
   
 0.683
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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