STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112159988FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived). (1022 aa)    
Predicted Functional Partners:
CDC42
Cell division cycle 42.
    
 0.663
LOC112144774
Cell division cycle 42.
    
 0.663
nrp1
Neuropilin; Belongs to the neuropilin family.
     
 0.639
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.617
ENSOMEP00000021604
Macrophage stimulating 1 receptor b.
    
  0.617
LOC112145561
Macrophage stimulating 1 receptor a.
    
  0.617
LOC112158849
RAP1A, member of RAS oncogene family a.
     
 0.613
LOC112144686
RAP1A, member of RAS oncogene family b.
     
 0.613
LOC112155385
Uncharacterized protein.
     
 0.613
LOC112143725
Uncharacterized protein.
    
 0.606
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.