STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rcc1Regulator of chromosome condensation 1. (422 aa)    
Predicted Functional Partners:
adgrd1
Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.
   
 0.978
ran
GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 0.978
ranbp1
RAN binding protein 1.
   
 0.950
LOC112154894
RAN binding protein 2.
   
 0.937
ranbp3
RAN binding protein 3b.
    
 
 0.928
kpna4
Importin subunit alpha; Belongs to the importin alpha family.
   
 
 0.919
kpna3
Importin subunit alpha; Belongs to the importin alpha family.
   
 
 0.919
kpnb1
Karyopherin (importin) beta 1.
    
 
 0.874
RANGAP1
Ran GTPase activating protein 1.
   
 
 0.861
LOC112154694
Ran GTPase activating protein 1b.
   
 
 0.861
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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