STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmod2Leiomodin 2 (cardiac) b. (544 aa)    
Predicted Functional Partners:
ENSOMEP00000003143
LIM zinc-binding domain-containing protein.
   
 0.680
ENSOMEP00000015693
Nebulin.
   
 0.634
ENSOMEP00000000476
Myosin, light chain 1, alkali; skeletal, fast.
   
 
 0.628
ENSOMEP00000006927
Myosin, light chain 13.
   
 
 0.628
ENSOMEP00000004654
Myozenin 2a.
   
  
 0.567
ENSOMEP00000027287
Myozenin 2b.
   
  
 0.567
ENSOMEP00000011670
Cysteine and glycine-rich protein 3 (cardiac LIM protein).
   
  
 0.565
LOC112144614
Uncharacterized protein.
   
 0.560
LOC112145764
Myosin binding protein Hb.
   
 0.533
LOC112159187
Myosin binding protein Ha.
   
 0.533
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.