STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000011285Uncharacterized protein. (319 aa)    
Predicted Functional Partners:
ENSOMEP00000035400
Ubiquitin-like domain-containing protein.
   
  0.601
ENSOMEP00000020966
Ribosomal protein S27a.
    
  0.595
ENSOMEP00000027927
Ubiquitin-like domain-containing protein.
    
  0.543
ENSOMEP00000002833
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.486
LOC112162777
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
  0.477
LOC112159142
DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
    
  0.468
zfand4
Zinc finger, AN1-type domain 4.
    
  0.453
ifih1
Interferon induced with helicase C domain 1.
   
 0.453
ro60
Ro60, Y RNA binding protein.
   
  0.446
ENSOMEP00000013247
Ubiquitin-conjugating enzyme E2T (putative).
   
  0.443
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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