STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hbp1HMG-box transcription factor 1. (451 aa)    
Predicted Functional Partners:
LOC112143334
Ataxin 1b.
    
 
 0.731
atxn1
Ataxin 1a.
    
 
 0.730
LOC112160390
SIN3 transcription regulator family member Ab.
   
 
 0.709
sin3b
SIN3 transcription regulator family member B.
   
 
 0.709
sin3a
SIN3 transcription regulator family member Aa.
   
 
 0.709
LOC112159679
AXH domain-containing protein.
    
 
0.569
LOC112145385
Calcium channel, voltage dependent, alpha2/delta subunit 3.
      
 0.538
ENSOMEP00000002442
PDZ domain-containing protein.
      
 0.537
pim3
Serine/threonine-protein kinase; Proto-oncogene with serine/threonine kinase activity involved in cell survival and cell proliferation. Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. PIM subfamily.
      
 0.537
atxn1l
Ataxin 1-like.
    
 
 0.537
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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