STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112147231Homeobox and leucine zipper encoding a. (661 aa)    
Predicted Functional Partners:
lrit1
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.
    
 0.780
LOC112161409
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.
    
 0.671
ENSOMEP00000010591
Uncharacterized protein.
   
  0.623
ENSOMEP00000021778
Uncharacterized protein.
   
  0.623
LOC112148928
Cardiomyopathy associated 5.
    
 0.609
ENSOMEP00000023578
GRB10 interacting GYF protein 1a.
    
 
 0.604
ENSOMEP00000030693
CCR4-NOT transcription complex, subunit 1.
    
 
 0.593
smg6
SMG6 nonsense mediated mRNA decay factor.
    
 
 0.587
LOC112143654
Si:dkeyp-77h1.4.
  
 
  0.569
mysm1
Myb-like, SWIRM and MPN domains 1.
    
 0.568
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.