LOC112153501 protein (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC112153501

Si:ch211-221f10.2. (1384 aa)

Predicted Functional Partners:

abcc5

0.972

katnal2

0.715

usp10

0.693

gopc

0.680

ENSOMEP00000026519

0.627

ENSOMEP00000026529

0.627

LOC112146930

0.623

LOC112154630

0.623

slc9a3r2

0.623

LOC112146815

0.623

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000026519	ENSOMEP00000026529	ENSOMEP00000026519	ENSOMEP00000026529	Uncharacterized protein.	Uncharacterized protein.	0.915
ENSOMEP00000026519	LOC112153501	ENSOMEP00000026519	ENSOMEP00000012158	Uncharacterized protein.	Si:ch211-221f10.2.	0.627
ENSOMEP00000026519	abcc5	ENSOMEP00000026519	ENSOMEP00000031901	Uncharacterized protein.	ATP-binding cassette, sub-family C (CFTR/MRP), member 5.	0.627
ENSOMEP00000026529	ENSOMEP00000026519	ENSOMEP00000026529	ENSOMEP00000026519	Uncharacterized protein.	Uncharacterized protein.	0.915
ENSOMEP00000026529	LOC112153501	ENSOMEP00000026529	ENSOMEP00000012158	Uncharacterized protein.	Si:ch211-221f10.2.	0.627
ENSOMEP00000026529	abcc5	ENSOMEP00000026529	ENSOMEP00000031901	Uncharacterized protein.	ATP-binding cassette, sub-family C (CFTR/MRP), member 5.	0.627
LOC112146815	LOC112153501	ENSOMEP00000033109	ENSOMEP00000012158	SLC9A3 regulator 1b.	Si:ch211-221f10.2.	0.623
LOC112146815	LOC112154630	ENSOMEP00000033109	ENSOMEP00000016862	SLC9A3 regulator 1b.	Na(+)/H(+) exchange regulatory cofactor NHE-RF; Scaffold protein that connects plasma membrane proteins with members of the ezrin/moesin/radixin family and thereby helps to link them to the actin cytoskeleton and to regulate their surface expression.	0.892
LOC112146815	abcc5	ENSOMEP00000033109	ENSOMEP00000031901	SLC9A3 regulator 1b.	ATP-binding cassette, sub-family C (CFTR/MRP), member 5.	0.623
LOC112146930	LOC112153501	ENSOMEP00000013465	ENSOMEP00000012158	Na(+)/H(+) exchange regulatory cofactor NHE-RF; Scaffold protein that connects plasma membrane proteins with members of the ezrin/moesin/radixin family and thereby helps to link them to the actin cytoskeleton and to regulate their surface expression.	Si:ch211-221f10.2.	0.623
LOC112146930	abcc5	ENSOMEP00000013465	ENSOMEP00000031901	Na(+)/H(+) exchange regulatory cofactor NHE-RF; Scaffold protein that connects plasma membrane proteins with members of the ezrin/moesin/radixin family and thereby helps to link them to the actin cytoskeleton and to regulate their surface expression.	ATP-binding cassette, sub-family C (CFTR/MRP), member 5.	0.623
LOC112153501	ENSOMEP00000026519	ENSOMEP00000012158	ENSOMEP00000026519	Si:ch211-221f10.2.	Uncharacterized protein.	0.627
LOC112153501	ENSOMEP00000026529	ENSOMEP00000012158	ENSOMEP00000026529	Si:ch211-221f10.2.	Uncharacterized protein.	0.627
LOC112153501	LOC112146815	ENSOMEP00000012158	ENSOMEP00000033109	Si:ch211-221f10.2.	SLC9A3 regulator 1b.	0.623
LOC112153501	LOC112146930	ENSOMEP00000012158	ENSOMEP00000013465	Si:ch211-221f10.2.	Na(+)/H(+) exchange regulatory cofactor NHE-RF; Scaffold protein that connects plasma membrane proteins with members of the ezrin/moesin/radixin family and thereby helps to link them to the actin cytoskeleton and to regulate their surface expression.	0.623
LOC112153501	LOC112154630	ENSOMEP00000012158	ENSOMEP00000016862	Si:ch211-221f10.2.	Na(+)/H(+) exchange regulatory cofactor NHE-RF; Scaffold protein that connects plasma membrane proteins with members of the ezrin/moesin/radixin family and thereby helps to link them to the actin cytoskeleton and to regulate their surface expression.	0.623
LOC112153501	abcc5	ENSOMEP00000012158	ENSOMEP00000031901	Si:ch211-221f10.2.	ATP-binding cassette, sub-family C (CFTR/MRP), member 5.	0.972
LOC112153501	gopc	ENSOMEP00000012158	ENSOMEP00000012233	Si:ch211-221f10.2.	Golgi-associated PDZ and coiled-coil motif containing.	0.680
LOC112153501	katnal2	ENSOMEP00000012158	ENSOMEP00000034175	Si:ch211-221f10.2.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.715
LOC112153501	slc9a3r2	ENSOMEP00000012158	ENSOMEP00000029663	Si:ch211-221f10.2.	Uncharacterized protein.	0.623