STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000012373BP28CT domain-containing protein. (349 aa)    
Predicted Functional Partners:
nol6
Nucleolar protein 6.
   
 0.997
tbl3
Transducin (beta)-like 3.
   
 0.997
LOC112138030
WD repeat domain 3.
   
 0.997
wdr36
WD repeat domain 36.
   
 0.997
ENSOMEP00000034192
PWP2 small subunit processome component.
   
 0.997
wdr75
WD repeat domain 75.
   
 0.997
ENSOMEP00000035991
UTP20 small subunit processome component.
   
 0.997
ENSOMEP00000001164
NOP58 ribonucleoprotein homolog (yeast).
   
 0.996
wdr46
WD repeat domain 46.
   
 0.996
utp4
UTP4 small subunit processome component.
   
 0.996
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.