STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankrd1Ankyrin repeat domain 1a (cardiac muscle). (307 aa)    
Predicted Functional Partners:
got2
Aspartate aminotransferase.
    
 0.707
hao2
Hydroxyacid oxidase 2 (long chain).
   
 0.675
ENSOMEP00000030758
Hydroxyacid oxidase (glycolate oxidase) 1.
   
 0.675
LOC112160538
Lysyl oxidase-like 1.
   
 0.643
ift81
Intraflagellar transport 81 homolog.
    
 0.636
got1
Aspartate aminotransferase.
    
  0.633
GOT1
Aspartate aminotransferase.
    
  0.633
ift22
Intraflagellar transport 22 homolog (Chlamydomonas).
    
 0.632
ENSOMEP00000012448
KH type-2 domain-containing protein.
    
 0.626
ENSOMEP00000018872
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 0.626
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.