STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112156226Ubiquitin-like domain-containing protein. (95 aa)    
Predicted Functional Partners:
mysm1
Myb-like, SWIRM and MPN domains 1.
   
 0.995
ENSOMEP00000001754
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.971
trip12
Thyroid hormone receptor interactor 12.
   
 0.961
traf7
TNF receptor-associated factor 7.
    
 0.947
nbr1
NBR1 autophagy cargo receptor a.
   
 0.941
ENSOMEP00000023000
NBR1 autophagy cargo receptor b.
   
 0.941
rps25
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.928
rps18
Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.
   
 0.922
rps21
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
   
  0.921
ENSOMEP00000020653
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
 0.918
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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