STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112160961Cholinergic receptor, nicotinic, beta 4 (neuronal). (547 aa)    
Predicted Functional Partners:
LOC112158634
Cholinergic receptor, nicotinic, alpha 4b.
  
 
 
0.823
ENSOMEP00000000605
Uncharacterized protein.
  
0.813
ENSOMEP00000030586
Cholinergic receptor, nicotinic, alpha 5.
  
0.744
chrna2
Cholinergic receptor, nicotinic, alpha 2b (neuronal).
  
 
 
0.734
CHRNA1
Cholinergic receptor nicotinic alpha 1 subunit.
  
0.721
LOC112153654
Cholinergic receptor, nicotinic, beta 3b (neuronal).
  
0.718
LOC112137509
Cholinergic receptor, nicotinic, beta polypeptide 3a.
  
0.717
LOC112160959
Cholinergic receptor, nicotinic, alpha 3.
  
  
0.675
LOC112162515
Si:ch211-39a7.1.
  
 
0.628
ENSOMEP00000026083
Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
  
 
0.626
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.