STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000013892Zinc finger CCCH-type containing 3. (759 aa)    
Predicted Functional Partners:
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.956
ENSOMEP00000014217
FIP1 like 1b (S. cerevisiae).
    
 0.952
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.952
sympk
Symplekin.
   
 0.951
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
   
 0.950
papolg
Poly(A) polymerase gamma.
    
 0.949
cpsf3
Cleavage and polyadenylation specific factor 3.
   
 0.947
ENSOMEP00000022438
Cleavage stimulation factor, 3' pre-RNA, subunit 1.
   
 0.947
nudt21
Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]
    
 0.946
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
   
 0.931
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.